Package: CoNI
Type: Package
Title: Correlation Guided Network Integration (CoNI)
Version: 0.1.0
Date: 2021-09-28
Authors@R: c(person(given = "José Manuel", 
                    family = "Monroy Kuhn", 
                    email = "nolozz@gmail.com",
                    role = c("aut", "cre")),
             person(given = "Dominik",
                    family = "Lutter",
                    email = "dominik.lutter@helmholtz-muenchen.de",
                    role = c("ths")),
             person(given = "Valentina",
                    family = "Klaus",
                    role = c("ctb")))
Description: Integrates two numerical omics data sets from the same
        samples using partial correlations. The output can be
        represented as a network, bipartite graph or a hypergraph
        structure. The method used in the package refers to Klaus et al
        (2021) <doi:10.1016/j.molmet.2021.101295>.
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.0)
RoxygenNote: 7.1.2.9000
Imports: igraph (>= 1.2.6), doParallel (>= 1.0.16), cocor (>= 1.1.3),
        ggplot2 (>= 3.3.3), forcats (>= 0.5.1), dplyr (>= 1.0.5),
        data.table (>= 1.13.7), tibble (>= 3.1.0), foreach (>= 1.5.1),
        genefilter (>= 1.72.1), ggrepel (>= 0.9.1), gplots (>= 3.1.1),
        gridExtra (>= 2.3), plyr (>= 1.8.6), ppcor (>= 1.1), tidyr (>=
        1.1.3), Hmisc (>= 4.4.2), methods (>= 4.0.3), rlang (>=
        0.4.10), tidyselect (>= 1.1.0)
Suggests: kableExtra (>= 1.3.2), knitr (>= 1.31), rmarkdown (>= 2.6)
VignetteBuilder: knitr
SystemRequirements: python3
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev python3 zlib1g-dev
Repository: https://jmanuelmk.r-universe.dev
Date/Publication: 2022-03-29 08:50:50 UTC
RemoteUrl: https://github.com/jmanuelmk/coni
RemoteRef: HEAD
RemoteSha: a5b5530328744d421d0ded7d148ec8d0dcf9b09a
NeedsCompilation: no
Packaged: 2026-06-17 10:38:49 UTC; root
Author: José Manuel Monroy Kuhn [aut, cre],
  Dominik Lutter [ths],
  Valentina Klaus [ctb]
Maintainer: José Manuel Monroy Kuhn <nolozz@gmail.com>